sic.c

   1 /*
   2  * sic.c - investigation of the sic precipitation process of silicon carbide
   3  *
   4  * author: Frank Zirkelbach <frank.zirkelbach@physik.uni-augsburg.de>
   5  *
   6  */
   7
   8 #include <math.h>
   9
  10 #include "moldyn.h"
  11
  12 #include "posic.h"
  13
  14 int hook(void *moldyn,void *hook_params) {
  15
  16         t_moldyn *md;
  17
  18         md=moldyn;
  19
  20         /* switch to direct scaling in first hook */
  21         if(md->schedule.count==0)
  22                 set_pt_scale(md,0,0,T_SCALE_BERENDSEN,100.0);
  23         /* switch off temp scaling in second hook */
  24         if(md->schedule.count==1)
  25                 set_pt_scale(md,0,0,0,0);
  26
  27         //set_temperature(md,md->t_ref-100.0);
  28
  29         return 0;
  30 }
  31
  32 int main(int argc,char **argv) {
  33
  34         /* check argv */
  35         if(argc!=3) {
  36                 printf("[sic] usage: %s <logdir> <temperatur>\n",argv[0]);
  37                 return -1;
  38         }
  39
  40         /* main moldyn structure */
  41         t_moldyn md;
  42
  43         /* potential parameters */
  44         t_lj_params lj;
  45         t_ho_params ho;
  46         t_tersoff_mult_params tp;
  47
  48         /* testing location & velocity vector */
  49         t_3dvec r,v;
  50
  51         /* initialize moldyn */
  52         moldyn_init(&md,argc,argv);
  53
  54         /* choose integration algorithm */
  55         set_int_alg(&md,MOLDYN_INTEGRATE_VERLET);
  56
  57         /* choose potential */
  58         //set_potential1b(&md,tersoff_mult_1bp,&tp);
  59         //set_potential2b(&md,tersoff_mult_2bp,&tp);
  60         //set_potential2b_post(&md,tersoff_mult_post_2bp,&tp);
  61         //set_potential3b(&md,tersoff_mult_3bp,&tp);
  62         set_potential2b(&md,lennard_jones,&lj);
  63         //set_potential2b(&md,harmonic_oscillator,&ho);
  64
  65         /* cutoff radius */
  66         //set_cutoff(&md,TM_S_SI);
  67         //set_cutoff(&md,2*LC_SI*0.5*sqrt(1.5));
  68         set_cutoff(&md,2.0*LC_SI);
  69
  70         /*
  71          * potential parameters
  72          */
  73
  74         /* lennard jones */
  75         lj.sigma6=LJ_SIGMA_SI*LJ_SIGMA_SI*LJ_SIGMA_SI;
  76         lj.sigma6*=lj.sigma6;
  77         lj.sigma12=lj.sigma6*lj.sigma6;
  78         lj.epsilon4=4.0*LJ_EPSILON_SI;
  79         lj.uc=lj.epsilon4*(lj.sigma12/pow(md.cutoff,12.0)-lj.sigma6/pow(md.cutoff,6));
  80
  81         /* harmonic oscillator */
  82         //ho.equilibrium_distance=0.25*sqrt(3.0)*LC_SI;
  83         ho.equilibrium_distance=LC_SI;
  84         ho.spring_constant=LJ_EPSILON_SI;
  85
  86         /*
  87          * tersoff mult potential parameters for SiC
  88          */
  89         tp.S[0]=TM_S_SI;
  90         tp.R[0]=TM_R_SI;
  91         tp.A[0]=TM_A_SI;
  92         tp.B[0]=TM_B_SI;
  93         tp.lambda[0]=TM_LAMBDA_SI;
  94         tp.mu[0]=TM_MU_SI;
  95         tp.beta[0]=TM_BETA_SI;
  96         tp.n[0]=TM_N_SI;
  97         tp.c[0]=TM_C_SI;
  98         tp.d[0]=TM_D_SI;
  99         tp.h[0]=TM_H_SI;
 100
 101         tp.S[1]=TM_S_C;
 102         tp.R[1]=TM_R_C;
 103         tp.A[1]=TM_A_C;
 104         tp.B[1]=TM_B_C;
 105         tp.lambda[1]=TM_LAMBDA_C;
 106         tp.mu[1]=TM_MU_C;
 107         tp.beta[1]=TM_BETA_C;
 108         tp.n[1]=TM_N_C;
 109         tp.c[1]=TM_C_C;
 110         tp.d[1]=TM_D_C;
 111         tp.h[1]=TM_H_C;
 112
 113         tp.chi=TM_CHI_SIC;
 114
 115         tersoff_mult_complete_params(&tp);
 116
 117         /* set (initial) dimensions of simulation volume */
 118         set_dim(&md,6*LC_SI,6*LC_SI,6*LC_SI,TRUE);
 119
 120         /* set periodic boundary conditions in all directions */
 121         set_pbc(&md,TRUE,TRUE,TRUE);
 122
 123         /* create the lattice / place atoms */
 124         //create_lattice(&md,CUBIC,LC_SI,SI,M_SI,
 125         create_lattice(&md,FCC,LC_SI,SI,M_SI,
 126         //create_lattice(&md,DIAMOND,LC_SI,SI,M_SI,
 127         //               ATOM_ATTR_1BP|ATOM_ATTR_2BP|ATOM_ATTR_3BP|ATOM_ATTR_HB,
 128                        ATOM_ATTR_2BP|ATOM_ATTR_HB,
 129                        0,6,6,6);
 130         moldyn_bc_check(&md);
 131
 132         /* testing configuration */
 133         //r.x=0.28*sqrt(3)*LC_SI/2;     v.x=0;
 134         //r.x=1.75*LC_SI;       v.x=-0.01;
 135         //r.y=0;                v.y=0;
 136         //r.z=0;                v.z=0;
 137         //add_atom(&md,SI,M_SI,0,
 138         //           ATOM_ATTR_1BP|ATOM_ATTR_2BP|ATOM_ATTR_3BP|ATOM_ATTR_HB,
 139         //           ATOM_ATTR_2BP|ATOM_ATTR_HB,
 140         //           &r,&v);
 141         //r.x=-r.x;     v.x=-v.x;
 142         //r.y=0;                v.y=0;
 143         //r.z=0;                v.z=0;
 144         //add_atom(&md,SI,M_SI,0,
 145         //           ATOM_ATTR_1BP|ATOM_ATTR_2BP|ATOM_ATTR_3BP|ATOM_ATTR_HB,
 146         //           ATOM_ATTR_2BP|ATOM_ATTR_HB,
 147         //           &r,&v);
 148
 149         /* set temperature & pressure */
 150         set_temperature(&md,atof(argv[2])+273.0);
 151         set_pressure(&md,ATM);
 152
 153         /* set p/t scaling */
 154         //set_pt_scale(&md,P_SCALE_BERENDSEN,0.001,
 155         //                 T_SCALE_BERENDSEN,100.0);
 156         //set_pt_scale(&md,0,0,T_SCALE_DIRECT,1.0);
 157         //set_pt_scale(&md,P_SCALE_BERENDSEN,0.001,0,0);
 158
 159         /* initial thermal fluctuations of particles (in equilibrium) */
 160         thermal_init(&md,TRUE);
 161
 162         /* create the simulation schedule */
 163         moldyn_add_schedule(&md,101,1.0);
 164         //moldyn_add_schedule(&md,501,1.0);
 165         //moldyn_add_schedule(&md,501,1.0);
 166
 167         /* schedule hook function */
 168         //moldyn_set_schedule_hook(&md,&hook,NULL);
 169
 170         /* activate logging */
 171         moldyn_set_log_dir(&md,argv[1]);
 172         moldyn_set_report(&md,"Frank Zirkelbach","Test 1");
 173         moldyn_set_log(&md,LOG_TOTAL_ENERGY,1);
 174         moldyn_set_log(&md,VISUAL_STEP,1);
 175         moldyn_set_log(&md,CREATE_REPORT,0);
 176
 177         /*
 178          * let's do the actual md algorithm now
 179          *
 180          * integration of newtons equations
 181          */
 182         moldyn_integrate(&md);
 183
 184         /* close */
 185         moldyn_shutdown(&md);
 186
 187         return 0;
 188 }
 189