sic.c

   1 /*
   2  * sic.c - investigation of the sic precipitation process of silicon carbide
   3  *
   4  * author: Frank Zirkelbach <frank.zirkelbach@physik.uni-augsburg.de>
   5  *
   6  */
   7
   8 #include <math.h>
   9
  10 #include "moldyn.h"
  11 #include "math/math.h"
  12 #include "init/init.h"
  13 #include "visual/visual.h"
  14
  15 #include "posic.h"
  16
  17 int main(int argc,char **argv) {
  18 printf("%d\n",sizeof(t_atom));
  19         /* main moldyn structure */
  20         t_moldyn md;
  21
  22         /* potential parameters */
  23         t_lj_params lj;
  24         t_ho_params ho;
  25         t_tersoff_mult_params tp;
  26
  27         /* initialize moldyn */
  28         printf("[sic] moldyn init\n");
  29         moldyn_init(&md,argc,argv);
  30
  31         /* choose integration algorithm */
  32         printf("[sic] setting integration algorithm\n");
  33         set_int_alg(&md,MOLDYN_INTEGRATE_VERLET);
  34
  35         /* choose potential */
  36         printf("[sic] selecting potential\n");
  37         set_potential1b(&md,tersoff_mult_1bp,&tp);
  38         set_potential2b(&md,tersoff_mult_2bp,&tp);
  39         set_potential3b(&md,tersoff_mult_3bp,&tp);
  40         //set_potential2b(&md,lennard_jones,&lj);
  41
  42         /*
  43          * potential parameters
  44          */
  45
  46         /* lennard jones */
  47         lj.sigma6=LJ_SIGMA_SI*LJ_SIGMA_SI*LJ_SIGMA_SI;
  48         lj.sigma6*=lj.sigma6;
  49         lj.sigma12=lj.sigma6*lj.sigma6;
  50         lj.epsilon4=4.0*LJ_EPSILON_SI;
  51
  52         /* harmonic oscillator */
  53         ho.equilibrium_distance=0.25*sqrt(3.0)*LC_SI;
  54         ho.spring_constant=1;
  55
  56         /*
  57          * tersoff mult potential parameters for SiC
  58          */
  59         tp.S[0]=TM_S_SI;
  60         tp.R[0]=TM_R_SI;
  61         tp.A[0]=TM_A_SI;
  62         tp.B[0]=TM_B_SI;
  63         tp.lambda[0]=TM_LAMBDA_SI;
  64         tp.mu[0]=TM_MU_SI;
  65         tp.beta[0]=TM_BETA_SI;
  66         tp.n[0]=TM_N_SI;
  67         tp.c[0]=TM_C_SI;
  68         tp.d[0]=TM_D_SI;
  69         tp.h[0]=TM_H_SI;
  70
  71         tp.S[1]=TM_S_C;
  72         tp.R[1]=TM_R_C;
  73         tp.A[1]=TM_A_C;
  74         tp.B[1]=TM_B_C;
  75         tp.lambda[1]=TM_LAMBDA_C;
  76         tp.mu[1]=TM_MU_C;
  77         tp.beta[1]=TM_BETA_C;
  78         tp.n[1]=TM_N_C;
  79         tp.c[1]=TM_C_C;
  80         tp.d[1]=TM_D_C;
  81
  82         tp.chi=TM_CHI_SIC;
  83
  84         tersoff_mult_complete_params(&tp);
  85
  86         /* cutoff radius */
  87         printf("[sic] setting cutoff radius\n");
  88         set_cutoff(&md,TM_S_SI);
  89         //set_cutoff(&md,1.0*LC_SI);
  90
  91         /* set (initial) dimensions of simulation volume */
  92         printf("[sic] setting dimensions\n");
  93         set_dim(&md,4*LC_SI,4*LC_SI,4*LC_SI,TRUE);
  94
  95         /* set periodic boundary conditions in all directions */
  96         printf("[sic] setting periodic boundary conditions\n");
  97         set_pbc(&md,TRUE,TRUE,TRUE);
  98
  99         /* create the lattice / place atoms */
 100         printf("[sic] creating atoms\n");
 101         create_lattice(&md,DIAMOND,LC_SI,SI,M_SI,
 102                        ATOM_ATTR_1BP|ATOM_ATTR_2BP|ATOM_ATTR_3BP,
 103                        //ATOM_ATTR_2BP,
 104                        0,4,4,4);
 105
 106         /* setting a nearest neighbour distance for the moldyn checks */
 107         set_nn_dist(&md,sqrt(3.0)*LC_SI/4.0); /* diamond ! */
 108
 109         /* set temperature */
 110         printf("[sic] setting temperature\n");
 111         set_temperature(&md,10.0);
 112
 113         /* initial thermal fluctuations of particles */
 114         printf("[sic] thermal init\n");
 115         thermal_init(&md);
 116
 117         /* create the simulation schedule */
 118         printf("[sic] adding schedule\n");
 119         moldyn_add_schedule(&md,1000,1.0e-15);
 120
 121         /* activate logging */
 122         printf("[sic] activate logging\n");
 123         moldyn_set_log(&md,LOG_TOTAL_ENERGY,"saves/test-energy",10);
 124         moldyn_set_log(&md,VISUAL_STEP,"saves/test-visual",10);
 125
 126         /*
 127          * let's do the actual md algorithm now
 128          *
 129          * integration of newtons equations
 130          */
 131
 132         printf("[sic] integration start, go get a coffee ...\n");
 133         moldyn_integrate(&md);
 134
 135         /* close */
 136
 137         printf("[sic] shutdown\n");
 138         moldyn_shutdown(&md);
 139
 140         return 0;
 141 }
 142