run

   1 [ ! -d $1 ] && mkdir $1
   2 ./clean $1
   3 ./sic $@
   4 if [ "$?" == "0" ]; then
   5         #./perms
   6         if [ "$1" ] ; then
   7                 ./visualize -d $1
   8                 #rasmol -32 -nodisplay < $1/visualize.scr > /dev/null 2>&1
   9                 ./ppm2avi $1
  10         fi
  11 fi