#!/bin/bash DIR="$1" for i in $1/s-*.save; do FILE="`basename $i`" NUM="`echo $FILE | awk -F- '{ print $2 }' | awk -F. '{ print $1 }'`" TRG="$DIR/atomic_conf_${NUM}.xyz" echo "converting $i -> $TRG" ./s2xyz $i > $TRG done