#!/bin/bash

if [ ! -d $1 ]; then
	echo "$1 is not a directory"
	exit 1
fi

echo "processing $1 ..."

rm -f $1/bond_analyze.txt

for i in $1/*.save; do
	bai="`./bond_analyze $i | grep '\[bond' | grep quality`"
	time=`echo $bai | awk '{ print $4 }'`
	quality4=`echo $bai | awk '{ print $8 }'`
	quality3=`echo $bai | awk '{ print $10 }'`
	count=`echo $bai | awk '{ print $12 }'`
	echo "$time $quality4 $quality3 $count" >> $1/bond_analyze.txt
done

echo "done"